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OpenMS 2.8.0 documentation
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OpenMS 2.8.0 documentation

Introduction

  • Introduction
  • Background

Getting Started

  • Installation on GNU/Linux
  • Installation on Windows
  • Installation on macOS

Quick Start Guides

  • User Quickstart Guide
  • Contribute to OpenMS

Tutorials

  • TOPP Tutorial
  • Concepts
    • TOPP and OpenMS
  • TOPPView Main Interface
    • TOPPView Introduction
    • Views in TOPPView
    • Display Modes and View Options in TOPPView
    • Data Analysis in TOPPView
    • Data Editing in TOPPView
    • TOPPView Hotkeys
  • Calling TOPP tools from TOPPView
    • Smoothing Raw Data
    • Subtracting a Baseline from a Spectrum
    • Picking Peaks
    • Feature Detection on Centroided Data
  • Advanced Users: Tips & Tricks
    • TOPP for Advanced Users
  • Scripting with TOPP
    • General Introduction
    • File Handling
    • Profile data processing
    • Calibration
    • Map Alignment
    • Feature Detection
    • Feature Grouping
    • Consensus Peptide Identification
    • Peptide Property Prediction
    • Quality Control
    • Conversion Between OpenMS XML Formats and Text Formats
  • TOPPAS Tutorial
    • General Introduction
    • User Interface
    • Examples
  • KNIME Tutorial

OpenMS TOPP Tools

  • TOPP
    • TOPPView
    • TOPPAS
    • INIFileEditor
    • SwathWizard
  • UTILS
    • ProteomicsLFQ
  • Adding New Tool to The TOPP suite

Developer Resources

  • Developer Guidelines For Adding New Dependent Libraries
  • External Code using OpenMS
  • Custom Compilation of OpenMS

OpenMS GitHub Workflow

  • OpenMS Git Workflow
  • Reporting Bugs and Issues
  • Write and Label GitHub Issues
  • Pull Request Checklist

Frequently Asked Questions

  • Developer FAQ
  • Contributor FAQ

Downloads

  • OpenMS Installers
  • Workflows
  • OpenMS Releases
  • Other Resources

Glossary

  • OpenMS Glossary

Contact Us

  • Contact Us
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